I have ended up scrapping the Java in favor of Python. As a bonus, it appears that I will now be able to add in tooltips, and have them directly pointed at the wiki (Ex: if your cursor is after the word add, and you press control + space, a small window appears with the wiki page for the add command.)
It uses WxPython, so anyone who wants to use it will also have to install Python and WxPython, but for anyone interested in something as code oriented as writing bots, this really shouldn't be a problem.
I have to re-implement the postfix/infix translations, but that shouldn't be too hard to do.
I'll release a beta once I get at least one of the useful features working fully. (Besides load, save, and saveAs, which I already have built into it)